×Understanding how environmental conditions shape the functional composition of ecological communities is a central goal in community ecology. In this study, we apply this framework to the reptile and amphibian assemblages within Greece’s Mount Chelmos protected area. Based on comprehensive field surveys (2018–2021) across 168 sampling stations, we compiled species trait databases and quantified functional diversity using a corrected Rao’s Q index. We modeled the response of functional diversity to climate, land cover, topography (altitude, slope, aspect), geographic location, and taxonomic diversity, using Generalized Additive Models (GAMs). Additionally, we examined traitspace structure via PCA and evaluated environmental drivers of trait composition with multivariate GAMs. For reptiles, functional diversity was significantly affected by altitude, climate, and aspect, with higher values predicted in water-associated marginal zones surrounding the mountain massif. Traitspace analysis revealed clear ecological structuring along axes related to locomotion, body size, reproductive mode, foraging strategy, and substrate use, shaped by distinct combinations of environmental filters. In amphibians, environmental effects on functional diversity were not statistically significant; however, traitspace showed discernible responses to land cover, climate, and aspect, suggesting weaker—though detectable—filtering processes. Collectively, our findings indicate that Mount Chelmos functions as a system that modulates diversity, with environmental filters operating at fine-to-medium spatial scales to shape the functional composition and
diversity of its herpetofauna.